Serialized Form

Package org.biolegato.core.data.sequence

Class org.biolegato.core.data.sequence.Sequence extends java.util.Hashtable<java.lang.String,java.lang.Object> implements Serializable

Serialized Fields

listeners

java.util.LinkedList<E> listeners

This linked list stores all sequence listeners

Package org.biolegato.core.main

Class org.biolegato.core.main.ProgramWindow extends javax.swing.JFrame implements Serializable

serialVersionUID: 7526472295622776147L

Serialized Fields

properties

BLProperties properties

Stores the properties for BioLegato. The current properties registered are: determines the default canvas to show on startupdetermines the default file format for open/save dialogsdetermines the default font size for objects in BioLegato

Property	Used internally	Description
debug	Yes	determines whether or not to display debug information
plugins	Yes	sets the plugin directory
temp	Yes	sets the temporary files directory
shell.name	Yes	determines the shell to execute
shell.parameter	Yes	determines the parameter for directing the shell to execute a command
user.properties	Yes	determines whether or not to read the user's propery files (located in the user's home directory
user.properties	Yes	determines whether or not to read the user's plugin files (located in the user's home directory
default.canvas	Yes
default.fileformat	Yes
default.fontsize	Yes
default.sequencename	No	determines the name of new GDE sequences
GDE.menu	No	determines whether or not to read the GDE menu files (backwards compatibility mode)
GDE.help.viewer	No	determines which file to feed the help file to
GDE.help.path	No	the location to search for the help files

mainSeqDoc

SeqDoc mainSeqDoc

The main data container for BioLegato.

clipboard

Sequence[] clipboard

Global clipboard used for copy, cut, and paste

canvasPane

javax.swing.JTabbedPane canvasPane

The tab pane storing all of the canvases. This is stored so as to be able to get the current canvas for retrieving the current data selection.

menuHeadings

java.util.Hashtable<K,V> menuHeadings

Stores all of the menu headings in BioLegato. This hashtable is used to add menu items to BioLegato's menu headings. The key of the hashtable corresponds to the label of the menu heading. The value of the hashtable is the menu heading's object.

Package org.biolegato.core.plugintypes

Class org.biolegato.core.plugintypes.DataCanvas extends javax.swing.Box implements Serializable

Serialized Fields

program

ProgramWindow program

The window to use to obtain data from

Package org.biolegato.core.properties

Class org.biolegato.core.properties.BLProperties extends java.util.Properties implements Serializable

serialVersionUID: 7526472295622776168L

Serialized Fields

propertiesListeners

java.util.Hashtable<K,V> propertiesListeners

The list of all properties change listeners.

Class org.biolegato.core.properties.PropertiesCheckbox extends javax.swing.JCheckBox implements Serializable

Serialized Fields

propertyKey

java.lang.String propertyKey

properties

BLProperties properties

Class org.biolegato.core.properties.PropertiesNumber extends javax.swing.Box implements Serializable

serialVersionUID: 7526472295622777036L

Serialized Fields

spinner

javax.swing.JSpinner spinner

propertyKey

java.lang.String propertyKey

properties

BLProperties properties