A C E G I L O R S T V

A

actionPerformed(ActionEvent) - Method in class org.biolegato.ezmenu.ActionThread

Runs the command.

actionPerformed(ActionEvent) - Method in class org.biolegato.ezmenu.EZMenuItem

Makes the window visible so all of the variables may be set.

actionPerformed(ActionEvent) - Method in class org.biolegato.ezmenu.variables.GDEChooser

Handles selection changes of the radio buttons.

actionPerformed(ActionEvent) - Method in class org.biolegato.ezmenu.variables.GDEFileChooser

Handle the choose file button

ActionThread - Class in org.biolegato.ezmenu

Class used for making abstract actions which launch threads.

ActionThread(String, Runnable) - Constructor for class org.biolegato.ezmenu.ActionThread

Creates a new instance of ActionThread.

addButton(Action) - Method in class org.biolegato.ezmenu.EZMenuItem

Adds a button to the window.

addVariable(Map<String, Object>) - Method in class org.biolegato.ezmenu.EZMenuItem

This function is used to add variables to the window.

C

choice_list - Variable in class org.biolegato.ezmenu.variables.GDEChoiceList

The combobox contianing the data.

choices - Variable in class org.biolegato.ezmenu.variables.GDEChoiceList

The list of choices

choices - Variable in class org.biolegato.ezmenu.variables.GDEComboBox

The list of choices

close() - Method in class org.biolegato.ezmenu.variables.GDETempFile

Releases any files currently in use by this class

combobox - Variable in class org.biolegato.ezmenu.variables.GDEComboBox

The combobox contianing the data

comboboxUI - Variable in class org.biolegato.ezmenu.variables.GDEComboBox

The UI to enable scrolling of the JComboBox.

createVariable(Map) - Static method in class org.biolegato.ezmenu.EZRunWindow

Used to create BioLegato variables.

E

EZMenuItem - Class in org.biolegato.ezmenu

The window used for setting options to run a menu command.

EZMenuItem(String) - Constructor for class org.biolegato.ezmenu.EZMenuItem

Creates a new instance of a run window.

EZMenuType - Class in org.biolegato.ezmenu

An interface for menu readers.

EZMenuType() - Constructor for class org.biolegato.ezmenu.EZMenuType

EZRunWindow - Class in org.biolegato.ezmenu

EZRunWindow(String, String, Action[], LinkedList<Map<String, Object>>) - Constructor for class org.biolegato.ezmenu.EZRunWindow

Creates a new instance of EZRunWindow

G

GDEChoiceList - Class in org.biolegato.ezmenu.variables

A wrapper class used to abstract choice lists within command windows.

GDEChoiceList(Map) - Constructor for class org.biolegato.ezmenu.variables.GDEChoiceList

Creates a new instance of GDEComboBox (represents "choice_list" in GDE menu files).

GDEChooser - Class in org.biolegato.ezmenu.variables

Wrapper class for a group of radiobuttons.

GDEChooser(Map<String, Object>) - Constructor for class org.biolegato.ezmenu.variables.GDEChooser

Creates a new instance of GDEChooser.

GDEComboBox - Class in org.biolegato.ezmenu.variables

A wrapper class used to abstract combo boxes within command windows.

GDEComboBox(Map) - Constructor for class org.biolegato.ezmenu.variables.GDEComboBox

Creates a new instance of GDEComboBox (represents "choice_list" in GDE menu files).

GDEFileChooser - Class in org.biolegato.ezmenu.variables

A wrapper class used to abstract file selection within command windows.

GDEFileChooser(Map) - Constructor for class org.biolegato.ezmenu.variables.GDEFileChooser

Creates a new instance of GDETempFile.

GDEMenu - Class in org.biolegato.gdesupport.menu

GDEMenu is used to read and parse GDE menu files into into BioLegato

GDEMenu() - Constructor for class org.biolegato.gdesupport.menu.GDEMenu

GDESlider - Class in org.biolegato.ezmenu.variables

Wraps a widget(s) for selecting numeric values.

GDESlider(Map) - Constructor for class org.biolegato.ezmenu.variables.GDESlider

Creates a new instance of GDESlider

GDETempFile - Class in org.biolegato.ezmenu.variables

Stores information about the file fields used by the command

GDETempFile(Map) - Constructor for class org.biolegato.ezmenu.variables.GDETempFile

Creates a new instance of GDETempFile.

GDETextField - Class in org.biolegato.ezmenu.variables

A wrapper class used to abstract text fields within command windows.

GDETextField(Map) - Constructor for class org.biolegato.ezmenu.variables.GDETextField

Creates a new instance of GDETextField

GDEVariable - Interface in org.biolegato.ezmenu.variables

Abstract interface to relate widget variables and invisible variables (such as temporary files)

GDEWidgetVariable - Class in org.biolegato.ezmenu.variables

A superclass used to abstract variables for creating command windows.

GDEWidgetVariable(Map) - Constructor for class org.biolegato.ezmenu.variables.GDEWidgetVariable

Creates a new instance of GDEVariable (used to add the name to the variable).

getName() - Method in class org.biolegato.ezmenu.variables.GDETempFile

Returns the name of the variable.

getName() - Method in interface org.biolegato.ezmenu.variables.GDEVariable

Returns the name of the variable.

getName() - Method in class org.biolegato.ezmenu.variables.GDEWidgetVariable

Returns the name of the variable.

getType() - Static method in class org.biolegato.ezmenu.variables.GDEChoiceList

Returns the name of this type of variable.

getType() - Static method in class org.biolegato.ezmenu.variables.GDEChooser

Returns the name of this type of variable.

getType() - Static method in class org.biolegato.ezmenu.variables.GDEComboBox

Returns the name of this type of variable.

getType() - Static method in class org.biolegato.ezmenu.variables.GDEFileChooser

Returns the type name

getType() - Static method in class org.biolegato.ezmenu.variables.GDESlider

Returns the name of this type of variable.

getType() - Static method in class org.biolegato.ezmenu.variables.GDETempFile

Returns the type name

getType() - Static method in class org.biolegato.ezmenu.variables.GDETextField

Returns the name of this type of variable

getType() - Static method in class org.biolegato.ezmenu.variables.GDEWidgetVariable

Returns the name of this type of variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDEChoiceList

Returns the value of the variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDEChooser

Returns the value of the variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDEComboBox

Returns the value of the variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDESlider

Returns the current value of the variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDETempFile

Gets the current filename corresponding to this variable If the file does not exists, then this function creates a file to use for IO and writes any initial contents

getValue() - Method in class org.biolegato.ezmenu.variables.GDETextField

Returns the value of the variable.

getValue() - Method in interface org.biolegato.ezmenu.variables.GDEVariable

Returns the value of the variable.

getValue() - Method in class org.biolegato.ezmenu.variables.GDEWidgetVariable

Returns the value of the variable.

I

isWidget() - Method in class org.biolegato.ezmenu.variables.GDETempFile

Returns the widget status of the variable (i.e., is the variable displayable)

L

loadMenu(BLMain) - Static method in class org.biolegato.ezmenu.EZMenuType

Reads a menu into the given window/menu instances.

loadMenu() - Static method in class org.biolegato.gdesupport.menu.GDEMenu

Reads in the default .GDEMenus files.

O

org.biolegato.ezmenu - package org.biolegato.ezmenu

org.biolegato.ezmenu.variables - package org.biolegato.ezmenu.variables

org.biolegato.gdesupport.menu - package org.biolegato.gdesupport.menu

R

readGDEMenuFile(File) - Static method in class org.biolegato.gdesupport.menu.GDEMenu

This function loads a GDE formatted menu file into the program.

run() - Method in class org.biolegato.ezmenu.EZRunWindow

Used for running the command.

S

setCommand(String) - Method in class org.biolegato.ezmenu.EZMenuItem

Changes the command string.

stateChanged(ChangeEvent) - Method in class org.biolegato.ezmenu.variables.GDESlider

Handles synchronization between the slider and the spinner.

T

textfield - Variable in class org.biolegato.ezmenu.variables.GDETextField

The textfield for obtaining the data

V

variables - Variable in class org.biolegato.ezmenu.EZMenuItem

The list of variabes currently used by the window.

A C E G I L O R S T V