org.biolegato.gdesupport.canvas.list
Class GDEList

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JList
                  org.biolegato.gdesupport.canvas.list.GDEList

All Implemented Interfaces:

java.awt.event.MouseListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.Scrollable, GDECanvasObject

public class GDEList
extends javax.swing.JList
implements java.awt.event.MouseListener, GDECanvasObject

The JList of sequences in the GDE canvas.

Author:

Graham Alvare, Brian Fristensky

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JList

javax.swing.JList.AccessibleJList

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected GDEModel	datamodel Used for the relationship between the data model and the list
javax.swing.AbstractAction	getInfoAction The menu item "Get info..."
javax.swing.AbstractAction	groupAction Action for grouping sequences in the canvas
protected javax.swing.JPopupMenu	popup The right click menu for the GDE sequence list.
javax.swing.AbstractAction	selectAllAction The menu item "Select All"
javax.swing.AbstractAction	selectByNameAction The abstract action "Select sequence by name"
javax.swing.AbstractAction	selectGroupAction The menu item "Select group"
javax.swing.AbstractAction	ungroupAction Action for ungrouping sequences in the canvas

Fields inherited from class javax.swing.JList

HORIZONTAL_WRAP, VERTICAL, VERTICAL_WRAP

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

GDEList(GDECanvas canvas)
Constructs a new GDEList

Method Summary

void	addPopupMenuItem(javax.swing.JMenuItem item) Adds an item to the GDEList's popup menu
void	changeCase() Changes the case of the currently selected sequence (if the sequence is of inconsistent case, the case of the entire sequence is changed to the opposite case of the first character in the sequence.
int	column2X(int c) Converts a column number into a X co-ordinate
void	copy() Copies content from the current Editable object.
void	cut() Cuts content from the current Editable object.
void	delete() Displays a window to edit the currently selected sequence's properties
Cell[]	getData() Returns the currently selected data in the list.
void	getInfo() Displays a window to edit the currently selected sequence's properties
SequenceListModel	getListModel() Returns the current list model.
void	mouseClicked(java.awt.event.MouseEvent event) Checks for double clicks.
void	mouseEntered(java.awt.event.MouseEvent event) Currently does nothing
void	mouseExited(java.awt.event.MouseEvent event) Currently does nothing
void	mousePressed(java.awt.event.MouseEvent event) Checks for right clicks.
void	mouseReleased(java.awt.event.MouseEvent event) Checks for right clicks.
void	paste() Pastes content into the current Editable object.
int	row2Y(int r) Converts a row number into a Y co-ordinate
void	selectAll() Selects all the sequences within the list.
void	selectGroup() Selects the group members of the currently selected sequence(s)
void	setFont(java.awt.Font font) Updates the font for the canvas (ensures repaint)
int	X2Column(int X) Converts a X co-ordinate into a column number
int	Y2Row(int Y) Converts a Y co-ordinate into a row number

Methods inherited from class javax.swing.JList

addListSelectionListener, addSelectionInterval, clearSelection, createSelectionModel, ensureIndexIsVisible, fireSelectionValueChanged, getAccessibleContext, getAnchorSelectionIndex, getCellBounds, getCellRenderer, getDragEnabled, getFirstVisibleIndex, getFixedCellHeight, getFixedCellWidth, getLastVisibleIndex, getLayoutOrientation, getLeadSelectionIndex, getListSelectionListeners, getMaxSelectionIndex, getMinSelectionIndex, getModel, getNextMatch, getPreferredScrollableViewportSize, getPrototypeCellValue, getScrollableBlockIncrement, getScrollableTracksViewportHeight, getScrollableTracksViewportWidth, getScrollableUnitIncrement, getSelectedIndex, getSelectedIndices, getSelectedValue, getSelectedValues, getSelectionBackground, getSelectionForeground, getSelectionMode, getSelectionModel, getToolTipText, getUI, getUIClassID, getValueIsAdjusting, getVisibleRowCount, indexToLocation, isSelectedIndex, isSelectionEmpty, locationToIndex, paramString, removeListSelectionListener, removeSelectionInterval, setCellRenderer, setDragEnabled, setFixedCellHeight, setFixedCellWidth, setLayoutOrientation, setListData, setListData, setModel, setPrototypeCellValue, setSelectedIndex, setSelectedIndices, setSelectedValue, setSelectionBackground, setSelectionForeground, setSelectionInterval, setSelectionMode, setSelectionModel, setUI, setValueIsAdjusting, setVisibleRowCount, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

popup

protected javax.swing.JPopupMenu popup

The right click menu for the GDE sequence list.

datamodel

protected GDEModel datamodel

Used for the relationship between the data model and the list

selectGroupAction

public final javax.swing.AbstractAction selectGroupAction

The menu item "Select group"

getInfoAction

public final javax.swing.AbstractAction getInfoAction

The menu item "Get info..."

selectAllAction

public final javax.swing.AbstractAction selectAllAction

The menu item "Select All"

selectByNameAction

public final javax.swing.AbstractAction selectByNameAction

The abstract action "Select sequence by name"

groupAction

public final javax.swing.AbstractAction groupAction

Action for grouping sequences in the canvas

ungroupAction

public final javax.swing.AbstractAction ungroupAction

Action for ungrouping sequences in the canvas

Constructor Detail

GDEList

public GDEList(GDECanvas canvas)

Constructs a new GDEList

Method Detail

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent event)

Checks for double clicks. On a double click, this method opens up a sequence properties window.

Specified by:

mouseClicked in interface java.awt.event.MouseListener

Parameters:

event - the mouse event to check for the double click.

mousePressed

public void mousePressed(java.awt.event.MouseEvent event)

Checks for right clicks. On a right click, this method opens up a popup menu

Specified by:

mousePressed in interface java.awt.event.MouseListener

Parameters:

event - the mouse event to check for the right click.

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent event)

Checks for right clicks. On a right click, this method opens up a popup menu

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Parameters:

event - the mouse event to check for the right click.

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent event)

Currently does nothing

Specified by:

mouseEntered in interface java.awt.event.MouseListener

Parameters:

event - ignored.

mouseExited

public void mouseExited(java.awt.event.MouseEvent event)

Currently does nothing

Specified by:

mouseExited in interface java.awt.event.MouseListener

Parameters:

event - ignored.

row2Y

public int row2Y(int r)

Converts a row number into a Y co-ordinate

Parameters:

r - the row number

Returns:

the corresponding Y value

column2X

public int column2X(int c)

Converts a column number into a X co-ordinate

Parameters:

c - the column number

Returns:

the corresponding X value

Y2Row

public int Y2Row(int Y)

Converts a Y co-ordinate into a row number

Parameters:

Y - the Y value

Returns:

the corresponding row number

X2Column

public int X2Column(int X)

Converts a X co-ordinate into a column number

Parameters:

X - the X value

Returns:

the corresponding column number

copy

public void copy()

Copies content from the current Editable object.

Specified by:

copy in interface GDECanvasObject

cut

public void cut()

Cuts content from the current Editable object.

Specified by:

cut in interface GDECanvasObject

paste

public void paste()

Pastes content into the current Editable object.

Specified by:

paste in interface GDECanvasObject

selectAll

public void selectAll()

Selects all the sequences within the list.

changeCase

public void changeCase()

Changes the case of the currently selected sequence (if the sequence is of inconsistent case, the case of the entire sequence is changed to the opposite case of the first character in the sequence.

Specified by:

changeCase in interface GDECanvasObject

setFont

public void setFont(java.awt.Font font)

Updates the font for the canvas (ensures repaint)

Overrides:

setFont in class javax.swing.JComponent

Parameters:

font - the new font to handle.

addPopupMenuItem

public void addPopupMenuItem(javax.swing.JMenuItem item)

Adds an item to the GDEList's popup menu

Parameters:

item - the menu item to add.

getInfo

public void getInfo()

Displays a window to edit the currently selected sequence's properties

delete

public void delete()

Displays a window to edit the currently selected sequence's properties

getListModel

public SequenceListModel getListModel()

Returns the current list model.

Returns:

the current sequence list model.

getData

public Cell[] getData()

Returns the currently selected data in the list.

Specified by:

getData in interface GDECanvasObject

Returns:

the current data for usage by commands

selectGroup

public void selectGroup()

Selects the group members of the currently selected sequence(s)