Uses of Class
org.biolegato.gdesupport.data.Seq

Packages that use Seq

org.biolegato.gdesupport.data
org.biolegato.gdesupport.files

Uses of Seq in org.biolegato.gdesupport.data

Methods in org.biolegato.gdesupport.data that return Seq

static Seq[]	ClipboardWrapper.getClipboard() Obtains the current contents of the clipboard (null if empty).
Seq	Dataset.getLine(int number) Retrieves a sequence object from the Dataset specified by its y y.
Seq[]	ClipboardWrapper.toArray() Dumps the data contained within the clipboard wrapper

Methods in org.biolegato.gdesupport.data with parameters of type Seq

boolean	Dataset.addSequence(int y, Seq seq) Adds a sequence to the data container.
void	Dataset.group(Seq[] sequences)
static void	ClipboardWrapper.setClipboard(Seq[] copy) Changes the current contents of the clipboard.
void	Dataset.ungroup(Seq[] sequences)

Method parameters in org.biolegato.gdesupport.data with type arguments of type Seq

boolean

Dataset.addSequences(int y, java.util.Collection<Seq> seqs) Adds sequences to the data container.

Constructors in org.biolegato.gdesupport.data with parameters of type Seq

ClipboardWrapper(Seq[] cellArray)
Creates a new instance of ClipboardWrapper

Seq(Seq data)
Constructs new instances of sequence.

Uses of Seq in org.biolegato.gdesupport.files

Methods in org.biolegato.gdesupport.files with parameters of type Seq

abstract void	DataFormat.translateTo(java.lang.Appendable destination, Seq data, int offset, int length) Translates a string from the BioLegato internal format to the given file format.
void	FastAFile.translateTo(java.lang.Appendable result, Seq seq, int offset, int length) Translates a sequence into the FastA file format.
void	GDEFile.translateTo(java.lang.Appendable result, Seq seq, int offset, int length) Translates a sequence into the GDE file format.
void	GDEFlatfile.translateTo(java.lang.Appendable result, Seq seq, int offset, int length) Translates a sequence into the GDE flat file format.
void	GenBankFile2008.translateTo(java.lang.Appendable result, Seq seq, int offset, int length) Translates a sequence into the GenBank file format.