T-COFFEE, Version_8.14(Tue Oct 27 10:10:30 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=64
*
 BAD AVG GOOD
*
AF112443_CDS1    :  68
AF128239_CDS1    :  69
BOAJ5280_CDS1    :  54
BOAJ5281_CDS1    :  54
CAGTHIOGN_CDS1   :  70
CAGTHIOGN_CDS2   :  71
CAGT_CDS1        :  72
GMU12150_CDS1    :  68
ZMA133530_CDS1   :  45
cons             :  64

AF112443_CDS1    MARSIYFMA--FLVLAMTLFVAYGVQ-----GKEICCKE------
AF128239_CDS1    MARSIYFMA--FLVLAVTLFVANGVQ-----GQNNICKT------
BOAJ5280_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKPCYS------
BOAJ5281_CDS1    MKNTVKLSLIGFVMLTVLLLGETVIA-----QKRKPCYS------
CAGTHIOGN_CDS1   MAGFSKVIA--TIFLMMMLVFATGMV-----AEARTCES------
CAGTHIOGN_CDS2   MAGFSKVIA--TIFLMMMLVFATDMM-----AEAKICEA------
CAGT_CDS1        MAGFSKVVA--TIFLMMLLVFATDMM-----AEAKICEA------
GMU12150_CDS1    MSRSVPLVS--TICVLLLLLVATEMMGPTMVAEARTCES------
ZMA133530_CDS1   MR-IVYMAAV------MCLVLATMSS-----TSPSFCQAGGCIGC

cons             *     .         : *.            .   *        


AF112443_CDS1    --------LTKPVK--CSSDPLCQKLCMEKE-KYE--DGHCFT--
AF128239_CDS1    --------TSKHFKGLCFADSKCRKVCIQED-KFE--DGHCSK--
BOAJ5280_CDS1    --------QEPD--KTCEVN-RCKANCVKKH-KKILAFTSCIKEN
BOAJ5281_CDS1    --------QEPD--KTCEVN-RCKANCVKKH-KKILAFTSCIKEN
CAGTHIOGN_CDS1   --------QSHRFKGLCFSKSNCGSVCHT-E-GFN--GGHCRG--
CAGTHIOGN_CDS2   --------LSGNFKGLCLSSRDCGNVCRR-E-GFT--SGVCRG--
CAGT_CDS1        --------LSGNFKGLCLSSRDCGNVCRR-E-GFT--DGSCIG--
GMU12150_CDS1    --------QSHRFKGPCLSDTNCGSVCRT-E-RFT--GGHCRG--
ZMA133530_CDS1   PRAPPPPSDETCYEDLKCSASRCHLGCIHRGYKGT--GSYCRG--

cons                                   *   *             *    


AF112443_CDS1    -ILSKCLCMKRCN----AKT-----------LA------TELLA
AF128239_CDS1    -LQRKCLCTKNCVFDNIPNDVGTILVQDAKTLEAQLLEEEILGL
BOAJ5280_CDS1    NGNMYCRCQYPC------------------------------PP
BOAJ5281_CDS1    NGNMYCRCQYPC------------------------------PP
CAGTHIOGN_CDS1   -FRRRCFCTRH--------------------------------C
CAGTHIOGN_CDS2   -FPLKCFCRKPG-------------------------------A
CAGT_CDS1        -FRLQCFCTKPC-------------------------------A
GMU12150_CDS1    -FRRRCFCTKH--------------------------------C
ZMA133530_CDS1   ---RDCCCK----------------------------------H

cons                  * *