BIRCH - Gene Array Software

dapple

Dapple is a tool for segmentation, spot-finding, and quantitation of cDNA microarrays.  It implements various algorithms designed to make analysis of microarrays fast, accurate, and convenient for the user.

Documentation:
 

Dapple introduction (HTML)

Dapplie instructions (README)

Sample datafiles

To run dapple, type 'dapple'

TIGR ArrayViewer

A software tool designed to facilitate the presentation and analysis of microarray expression data, leading to the identification of genes that are differentially expressed. ArrayViewer is written in Java for cross-platform compatibility and reads and writes data using flat files or a database through stored procedures

Documentation:

ArrayViewer Overview  Adobe PDF (.pdf,  2230k)

Sample datafiles (sample.tav)

Sample report file (report.avr)

To run ArrayViewer, type 'av'

ArrayViewer was developed by the TIGR - The Institute for Genomic Research