# This is the master BIRCH menulist file. Any changes made here
# will be lost the next time you update the BIRCH system.
# You can add menu items in $BIRCH/local. See the BIRCH Administrator's
# guide on "Adding locally-installed programs and documentation."
File
	NewSequence
	NewWindow
	Open_XYLEMPIR
	ImportForeign
	ImportFree
	ExportForeign
	PrettyPrint
	SaveSel
	PrintSel
Documentation
	ViewDoc
Edit
	Sort
	CopyOut
	PasteIn
	Extract
	ExtractSubset
Protein
	GREASE	Ssl
	GARNIER	Ssl
	PROT2NUC
	PROSTAT
Similarity
	GGSEARCH
	GLSEARCH
	LALIGN
	SSEARCH
	ALIGN
	SHUFFLE
	PXHOM
Database
	BLASTP
	TBLASTN
	FASTAPROTEIN
	TFASTA
Patterns
	TACGpat	SL
	GeneParser	S
	Consensus	S
	PATSER	S
	GCMAT-INF-GC	S
Alignment
	clustalx	SLl
	tcoffee
	dialign-tx
	mrtrans
	Degap
	MakeCons
	varpos
	reform
	jalview
	boxshade
	makelogo	S
Phylogeny
	Phylip_doc
	Phylip
	PROTDIST	
	PROTPARS	
	PROML
Help
	Overview
	WindowsAndMenus
	Opening
	Selecting
	Grouping
	Properties
	EditMenu
	NewSequences
	Editing
	FAQ
	Index
